TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR7757-5p

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

AUAAAACCUUCAGCUAUCCAUC

miRBase

Precursor miRNA Sequence(5'-3')

UGCAUUACAUAUAAAACCUUCAGCUAUCCAUCUCCAUAUCAGCCUGUCUCUCUUAAUUUUGAAACAUUUUGGAAAUAUGCUUAAAUAUCCUUGAACAUAAGAACGAGCCACACAUGCUGCACCAAUACUAUGAAAAGUAGCAUAGAAUGAGUAAAAGAGGCUCUUGACUUUUAGAUCAUGCAAGAGCUUUGAUCUACAGGUAAACCCUUUUUUACUAACUACUAGCAGCUUUAAUCUGCCUUCUUAUCUAUAUGAUUAGUUAUUAUGUCUAAGUAUGUUUUUAGAAGAUUAAGCAAGCUCAUUCGAUAUGUAAAUGGAUAGUUUGAGGUUUUAUUUAUAAUGAU

miRBase

Precursor miRNA Structure(5'-3') 

UG     CAU          C          CUC      A CC  -U  CU       UUGAAACA                 AAUAUCCUUGAACAUAAGAACGAGCCACACAUGCUGCACCAAUACUAUGAAAAGUAGCAUAGAAUGAGUAAAAGAGGCUCUUGACUUUUAGA 
  CAUUA   AUAAAACCUU AGCUAUCCAU   CAUAUC G  UG  CU  CUUAAUU        UUUUGGAAAUAUGCUUA                                                                                            U
  |||||   |||||||||| ||||||||||   |||||| |  ||  ||  |||||||        |||||||||||||||||                                                                                             
  GUAAU   UAUUUUGGAG UUGAUAGGUA   GUAUAG C  AC  GA  GAAUUAG        AAGAUUUUUGUAUGAAU                                                                                            U
UA     AUU          U          AAU      - UU  UC  AC       --------                 CUGUAUUAUUGAUUAGUAUAUCUAUUCUUCCGUCUAAUUUCGACGAUCAUCAAUCAUUUUUUCCCAAAUGGACAUCUAGUUUCGAGAACGUA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR7757-5p        -AUAAAACCUUCAGCUAUCCAUC
bdi-miR7757-5p.1      CACAAAACCUUCAGCUACCCA--
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