TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR6201

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

UGACCCUGAGGCACUCAUACCG

miRBase

Precursor miRNA Sequence(5'-3')

ACCUGAGUUUGACCCUGAGGCACUCAUACCGCCAGCUUGUUUAGAAUGCUAGCCGCAUGAGUGCCUCAUGCAGCGGUAUCGCCGGUAUGAGUGUUUCAGGGUCAAGCUUCGGU

miRBase

Precursor miRNA Structure(5'-3') 

   U                           CCAGCUUGUUUAGAAUGCUAGCCG 
ACC GAGUUUGACCCUGAGGCACUCAUACCG                        C
||| |||||||||||||||||||||||||||                        A
UGG UUCGAACUGGGACUUUGUGAGUAUGGC                        A
   C                           CGCUAUGGCGACGUACUCCGUGAG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR6201      UGACCCUGAGGCACUCAUACCG
hvu-miR6201      UGACCCUGAGGCACUCAUACCG
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