TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

hvu-miR6201

Organism

Hordeum vulgare

Species

Mature miRNA Sequence(5'-3')

UGACCCUGAGGCACUCAUACCG

miRBase

Precursor miRNA Sequence(5'-3')

CAACUGAGUUUGACCCUGAGGCACUCAUACCGCUACCUAGUUUGGAAUGUUUACCGUAUGAAUGGCUCAGUUAGCGGUAUGAGUGUCUCAGGGUCAAAUUUUGAUUGC

miRBase

Precursor miRNA Structure(5'-3') 

-   - U                              C  -    -------   AAU 
 CAA C GAGUUUGACCCUGAGGCACUCAUACCGCUA CU AGUU       UGG   G
 ||| | |||||||||||||||||||||||||||||| || ||||       |||    
 GUU G UUUAAACUGGGACUCUGUGAGUAUGGCGAU GA UCGG       GCC   U
C   A U                              U  C    UAAGUAU   AUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR6201      UGACCCUGAGGCACUCAUACCG
hvu-miR6201      UGACCCUGAGGCACUCAUACCG
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