TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR531

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

CGCUCGCCGGAGCAGCGUGCA

miRBase

Precursor miRNA Sequence(5'-3')

GGUGGCUCCGCUCGCCGGAGCAGCGUGCAACGGAGGGAUCCCGCGCGCUGCUCCGUCGAGCGUGGCCACC

miRBase

Precursor miRNA Structure(5'-3') 

       C      C             AAC   G 
GGUGGCU CGCUCG CGGAGCAGCGUGC   GGA G
||||||| |||||| |||||||||||||   |||  
CCACCGG GCGAGC GCCUCGUCGCGCG   CCU U
       U      U             --C   A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bdi-miR531      GAUGCUCGCCGGAGCAGCGUGCUG
tae-miR531      --CGCUCGCCGGAGCAGCGUGCA-
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