TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR531

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

GAUGCUCGCCGGAGCAGCGUGCUG

miRBase

Precursor miRNA Sequence(5'-3')

CGGUGGCGAUGCUCGCCGGAGCAGCGUGCUGGGUCUUAGCCCCGCACGCUCCUUCGUCGAGUUUGGCUACCGUC

miRBase

Precursor miRNA Structure(5'-3') 

--       G U     C     C       U    C 
  CGGUGGC A GCUCG CGGAG AGCGUGC GGGU U
  ||||||| | ||||| ||||| ||||||| ||||  
  GCCAUCG U UGAGC GCUUC UCGCACG CCCG G
CU       G U     U     C       C    A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bdi-miR531      GAUGCUCGCCGGAGCAGCGUGCUG
tae-miR531      --CGCUCGCCGGAGCAGCGUGCA-
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