TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR5062-5p

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

UGAACCUUAGGGAACAGCCGCAU

miRBase

Precursor miRNA Sequence(5'-3')

CGUAGCUUCUUGAACCUUAGGGAACAGCCGCAUAACACCAUUAACUUGAAAACCACUUAUCUUAUCCCAAAACUGCUCCUACCACAAUAUAAGGGGUAAGGAAUGGUUUUUAGUUUGUGAGGUCAUGCGGAUUUUUCACCAAGGUUCAAGUGGUUAUC

miRBase

Precursor miRNA Structure(5'-3') 

C      U          A  -   C  -      A  AC   U    U        C  A         AAAACUGCUCC 
 GUAGCU CUUGAACCUU GG GAA AG CCGCAU AC  CAU AACU GAAAACCA UU UCUUAUCCC           U
 |||||| |||||||||| || ||| || |||||| ||  ||| |||| |||||||| || |||||||||            
 UAUUGG GAACUUGGAA CC CUU UU GGCGUA UG  GUG UUGA UUUUUGGU AA GGAAUGGGG           C
C      U          -  A   U  A      C  GA   U    -        -  -         AAUAUAACACC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR5062-5p      UGAACCUUAGGGAACAGCCGCAU
bdi-miR5062a        UGAACCUUGGGGAAAAGCCGCCU
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