TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR5062a

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

UGAACCUUGGGGAAAAGCCGCCU

miRBase

Precursor miRNA Sequence(5'-3')

CGUAGCAUGGUGAACCUUGGGGAAAAGCCGCCUAACAUGAUUAAAUUGUAUUUUGUUCUACUAUUCCAAAAUUGUUGUGGUACAAUAUAAGGUGCAGAGUAAAGUUUAACAUGUUAGGCGGAUUUUUCACUAAGGUUCAUGUGGUUAUC

miRBase

Precursor miRNA Structure(5'-3') 

C     AUG           G      -            A       G        U  ---------     UC  A 
 GUAGC   GUGAACCUUGG GAAAAG CCGCCUAACAUG UUAAAUU UAUUUUGU CU         ACUAU  CA A
 |||||   ||||||||||| |||||| |||||||||||| ||||||| |||||||| ||         |||||  ||  
 UAUUG   UACUUGGAAUC CUUUUU GGCGGAUUGUAC AAUUUGA AUGAGACG GG         UGGUG  GU U
C     GUG           A      A            -       A        U  AAUAUAACA     UU  U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR5062-5p      UGAACCUUAGGGAACAGCCGCAU
bdi-miR5062a        UGAACCUUGGGGAAAAGCCGCCU
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