TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR5049-3p

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

AAUAUGGAUCGGAGGGAGUAC

miRBase

Precursor miRNA Sequence(5'-3')

ACGGAAGGAUGUACUUCCUCCAAUCCGUAUUACUUAUCUUAGAUUUGUCUAGAUACAUACAUUUAUACAAAUUUAAGACGAAUAAUAUGGAUCGGAGGGAGUACCUGAUAAUAA

miRBase

Precursor miRNA Structure(5'-3') 

ACGGAAGGAU           A          C  A            C     AC 
          GUACUUCCUCC AUCCGUAUUA UU UCUUAGAUUUGU UAGAU  A
          ||||||||||| |||||||||| || |||||||||||| |||||   
          CAUGAGGGAGG UAGGUAUAAU AG AGAAUUUAAACA AUUUA  C
AAUAAUAGUC           C          A  C            U     CA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bdi-miR7714-3p      CUAAUAUGUAUCGAAGGGAGUAGC
tae-miR5049-3p      --AAUAUGGAUCGGAGGGAGUAC-
                      ****** **** ********