TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR7714-3p

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

CUAAUAUGUAUCGAAGGGAGUAGC

miRBase

Precursor miRNA Sequence(5'-3')

AUUAUGUGUGCUAUUUUCUCGGAUCAAUAUUACUUGUCGUUGGUUUAGUACAACUAAUAUGUAUCGAAGGGAGUAGCAUUUUCUGCA

miRBase

Precursor miRNA Structure(5'-3') 

-AUUAUGU            CG   CA      C    CG UG 
        GUGCUAUUUUCU  GAU  AUAUUA UUGU  U  G
        ||||||||||||  |||  |||||| ||||  |   
        UACGAUGAGGGA  CUA  UAUAAU AACA  A  U
ACGUCUUU            AG   UG      C    UG UU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bdi-miR7714-3p      CUAAUAUGUAUCGAAGGGAGUAGC
tae-miR5049-3p      --AAUAUGGAUCGGAGGGAGUAC-
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