TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR1139

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

AGAGUAACAUACACUAGUAACA

miRBase

Precursor miRNA Sequence(5'-3')

GCCACAGUGGAGAGUAACAUACACUAGUAACAUACACAUAUCCCUAGAACUAUAUAACUACCUUCAUAGUGGGUAGCAACAUAAGUGUGGUAUCAUGCAAAGCUUCAUUUAUUAGGUUAUAGACUCAUAUUGCAUUGGGACAUGUGAUGUUAUAGUAACUAGCUAAGUUACUCAAACUACCUCUCUCCUCGAUGUUACUAUUGAAGUUACUCCCACU

miRBase

Precursor miRNA Structure(5'-3') 

GCCAC     A       A A  C         ACACAUAUCCCUAGAACUAUAUAACUACCUUCAUAGUGGGUAGCAACAUAAGUGUGGUAUCAUGCAAAGCUUCAUUUA 
     AGUGG GAGUAAC U CA UAGUAACAU                                                                              U
     ||||| ||||||| | || |||||||||                                                                               
     UCACC CUCAUUG A GU AUCAUUGUA                                                                              G
-----     -       A -  U         GCUCCUCUCUCCAUCAAACUCAUUGAAUCGAUCAAUGAUAUUGUAGUGUACAGGGUUACGUUAUACUCAGAUAUUGGA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR1139      AGAGUAACAUACACUAGUAACA
bdi-miR1139      -GAGUAACAUACACUAGUAACA
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