TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR1139

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

GAGUAACAUACACUAGUAACA

miRBase

Precursor miRNA Sequence(5'-3')

UCCUCUGAUUGGACUAUUAUUUGUUCGCACUAUCACGAGGCUUGAGGCUGGUCACAGUGGCGAGUAACAUACACUAGUAACAUGCAUAUAUUAAAGUAGUAACAUAUAAGUCUCAUUUAU

miRBase

Precursor miRNA Structure(5'-3') 

-------------------------------------------------------------------------------U    -    ----     UAU 
                                                                                CCUC UGAU    UGGAC   U
                                                                                |||| ||||    |||||    
                                                                                GGAG ACUA    GCUUG   U
UAUUUACUCUGAAUAUACAAUGAUGAAAUUAUAUACGUACAAUGAUCACAUACAAUGAGCGGUGACACUGGUCGGAGUUC    C    UCAC     UUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR1139      AGAGUAACAUACACUAGUAACA
bdi-miR1139      -GAGUAACAUACACUAGUAACA
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