TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR1135

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

CUGCGACAAGUAAUUCCGAACGGA

miRBase

Precursor miRNA Sequence(5'-3')

CUACUCCCUCCAUUCGGAAUUACUUGUCUCGGAUAUGGAUGUAUCUAGAACUAAAAUACGUCUAGAUACAUCUAUUUCUGCGACAAGUAAUUCCGAACGGAGGGAGUAG

miRBase

Precursor miRNA Structure(5'-3') 

           A                U    U               A UAA 
CUACUCCCUCC UUCGGAAUUACUUGUC CGGA AUGGAUGUAUCUAGA C   A
||||||||||| |||||||||||||||| |||| ||||||||||||||| |    
GAUGAGGGAGG AAGCCUUAAUGAACAG GUCU UAUCUACAUAGAUCU G   A
           C                C    U               - CAU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR1135      CUGCGACAAGUAAUUCCGAACGGA
bdi-miR1135      UUUCGACAAGUAAUUCCGACCGGA
                  * **************** ****