TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR1135

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

UUUCGACAAGUAAUUCCGACCGGA

miRBase

Precursor miRNA Sequence(5'-3')

AGGAGCAUAAUUAGUACUUCCUCCGACCGGUAUUACUUGUCUCAAAUUUGCCCAAAUACGGAUGUAUCUAUGUGUAAAACGUGUCUAGAUACAUGUAAUAUUUCGACAAGUAAUUCCGACCGGAGGGAGUGCCAUAAU

miRBase

Precursor miRNA Structure(5'-3') 

AGGAGCAUAAUUA            AC   U          UCAAAU    CCAAAUACGGAUGUAUCUAU 
             GUACUUCCUCCG  CGG AUUACUUGUC      UUGC                    G
             ||||||||||||  ||| ||||||||||      ||||                    U
             CGUGAGGGAGGC  GCC UAAUGAACAG      AAUG                    A
-------UAAUAC            CA   U          CUUUAU    UACAUAGAUCUGUGCAAAAU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR1135      CUGCGACAAGUAAUUCCGAACGGA
bdi-miR1135      UUUCGACAAGUAAUUCCGACCGGA
                  * **************** ****