TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR1133

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

CAUAUACUCCCUCCGUCCGAAA

miRBase

Precursor miRNA Sequence(5'-3')

ACUUCUUAGUGAUAGUGGUCAAUUACAUCAUAUACUCCCUCCGUCCGAAAAAGUUUGUCCCAAGCUUGUUCCUCAAAUGGAUGUAUCUAGCACUAACUUGAUGCUACAUACAUUCAUUUGAGGGACACGCUUUUUCGGAUGGAGGGAGUAGUAAUUUUGAUAUACACACUGAAGUUGCUA

miRBase

Precursor miRNA Structure(5'-3') 

-----     UU    AUA   -    --     AUCAUA                      U      AAGCUUGUUCC              C     - UA 
     ACUUC  AGUG   GUG GUCA  AUUAC      UACUCCCUCCGUCCGAAAAAGU UGUCCC           UCAAAUGGAUGUAU UAGCA C  A
     |||||  ||||   ||| ||||  |||||      |||||||||||||||||||||| ||||||           |||||||||||||| ||||| |   
     UGAAG  UCAC   CAU UAGU  UAAUG      AUGAGGGAGGUAGGCUUUUUCG ACAGGG           AGUUUACUUACAUA AUCGU G  U
AUCGU     --    --A   A    UU     ------                      C      -----------              C     A UU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR1128      -UACUACUCCCUCCGUCCGAAA
bdi-miR1127      -AACUACUCCCUCCGUCCGAUA
tae-miR1133      CAUAUACUCCCUCCGUCCGAAA
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