TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR1128

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

UACUACUCCCUCCGUCCGAAA

miRBase

Precursor miRNA Sequence(5'-3')

AUAUGAGAGCAUGGGUGAGAGGUGCUUAGUUACUACUCCCUCCGUCCGAAAAUACUUGUCAUCAAAAUGAAUAAAAAAGGGGAUGUAUCUAGAACUAAAAUACAUCUAGAUACAUCCCCUUCUAUCCAUUUUGAUGACAACUAUUUCCGGACGGAGGGAGUAAUUGCUUCUUCUGGCUUGGCGUUUAUGU

miRBase

Precursor miRNA Structure(5'-3') 

       A  AU    G     UGCUU   UAC               A     C              A   AAA                 ACUA 
AUAUGAG GC  GGGU AGAGG     AGU   UACUCCCUCCGUCCG AAAUA UUGUCAUCAAAAUG AUA   AAGGGGAUGUAUCUAGA    A
||||||| ||  |||| |||||     |||   ||||||||||||||| ||||| |||||||||||||| |||   |||||||||||||||||    A
UGUAUUU CG  UUCG UCUUC     UCG   AUGAGGGAGGCAGGC UUUAU AACAGUAGUUUUAC UAU   UUCCCCUACAUAGAUCU    A
       G  -G    G     ----U   UUA               C     C              C   --C                 ACAU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR1128      -UACUACUCCCUCCGUCCGAAA
bdi-miR1127      -AACUACUCCCUCCGUCCGAUA
tae-miR1133      CAUAUACUCCCUCCGUCCGAAA
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