TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR1122a

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

UAGAUACAUCCGUAUCUAGA

miRBase

Precursor miRNA Sequence(5'-3')

AUAAGUACUCCCUCUGUUCCUAAAUACUCCCUCCGUCCCAAAAAUUUUGGCUUAGAUUUGUCUAAAUACGUAUGUAUCAAGUCAUGUUUUAGUAUUAGAUACAUCCGUAUCUAGACUAAUCUAAGACAAGAAUUUUGGGACGGAGGGAGUAUAAGUCUUUUUAGAGAUUCCACUACAAACUACAUACGGAUGUAUAUAGACAUAUUUUAGAGUGUAGAUUCACUCAUUUUACUUCGUAUGUAGUCCAUAGUGGAAUCUCUAAGAAGGCAUAUAUUUAGGAACAGAGGGUGUACCA

miRBase

Precursor miRNA Structure(5'-3') 

------------------------------------------------------------------------------------------------------------------------AUAAGUACUCCCUCUGUUCCUAA                    A     G        U     A     U       A   - AUG 
                                                                                                                                               AUACUCCCUCCGUCCCAAAA UUUUG CUUAGAUU GUCUA AUACG AUGUAUC AGU C   U
                                                                                                                                               |||||||||||||||||||| ||||| |||||||| ||||| ||||| ||||||| ||| |    
                                                                                                                                               UAUGAGGGAGGCAGGGUUUU AGAAC GAAUCUAA CAGAU UAUGC UACAUAG UUA G   U
ACCAUGUGGGAGACAAGGAUUUAUAUACGGAAGAAUCUCUAAGGUGAUACCUGAUGUAUGCUUCAUUUUACUCACUUAGAUGUGAGAUUUUAUACAGAUAUAUGUAGGCAUACAUCAAACAUCACCUUAGAGAUUUUUCUGAA                    A     A        U     C     C       A   U AUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR1122a      UAGAUACAUCCGUAUCUAGA
bdi-miR1122       UAGAUACAUCCGUAUUUGGA
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