TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR1122

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

UAGAUACAUCCGUAUUUGGA

miRBase

Precursor miRNA Sequence(5'-3')

UCGUCCAUGUAUCCAUAUUUCAUUGCCGAAAUAUUACAUGUGUAUCUAGACGUUUUUUACACAUAGAUACAUCCGUAUUUGGACAAAUUUGAGACGAGUAAUAGAGAUCGGAUGGAGUACAAUUUUUUCCCCUUCUUAUCUGGUCACCACAUACACAAAUUUGCACAGAACUGAACCACG

miRBase

Precursor miRNA Structure(5'-3') 

UCGUCCAUGUAUCCAUAUUUCAUUGCCGAAAUAUUACAUGUGUAUCUAGACGUUUUUUACACAUAGAUACA  C  A    GA        ---------A   G  UAAU    AUC   U       
                                                                       UC GU UUUG  CAAAUUUG          GAC AG    AGAG   GGA GGAGUA 
                                                                       || || ||||  ||||||||          ||| ||    ||||   ||| ||||| C
                                                                       AG CA AGAC  GUUUAAAC          CUG UC    UCUU   CCU UUUUAU 
-----------------------------------------------------------------GCACCA  U  -    AC        ACAUACACCA   G  -UAU    -CC   U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR1122a      UAGAUACAUCCGUAUCUAGA
bdi-miR1122       UAGAUACAUCCGUAUUUGGA
                  *************** * **