TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR10521

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

UUCGUUUUUUAUAGGAUGG

miRBase

Precursor miRNA Sequence(5'-3')

ACAUAUAUCCAGAUUCAUAGUACUAGAAUAUGUCAUAUCUAGUCCUAGAUUCGUUUUUUAUAGGAUGGAAGGAAUAUUGUUUUCUUGAAGAAACGUGUACUCUCUCCGUCCUAUAAAAACCAACAUAGUACCGGAUGUGACACAUUCUAUU

miRBase

Precursor miRNA Structure(5'-3') 

ACAUAUAUCCAGAUUCAUAGUAC      A          A  C   GA  C      U          A   A   -      CU 
                       UAGAAU UGUCAUAUCU GU CUA  UU GUUUUU AUAGGAUGGA GGA UAU UGUUUU  U
                       |||||| |||||||||| || |||  || |||||| |||||||||| ||| ||| ||||||   
                       AUCUUA ACAGUGUAGG CA GAU  AA CAAAAA UAUCCUGCCU UCU AUG GCAAAG  A
---------------------UU      C          C  U   AC  C      -          C   C   U      AA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR5490       UUGGAUUUUUAUUUAGGACGG
tae-miR10521      UUCGUUUUUUAU--AGGAUGG
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