TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR5490

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

UUGGAUUUUUAUUUAGGACGG

miRBase

Precursor miRNA Sequence(5'-3')

GCUACUCCAUGUCCUAAAGAAACCUCAUUCAGAAGGUGUACCUGGAUGACAUGUAUAUACAGGUACAUCCUUAAGAUUGGAUUUUUAUUUAGGACGGAGGGAGUAGG

miRBase

Precursor miRNA Structure(5'-3') 

G       --A         -    CC   U  AG    -        GAUGAC 
 CUACUCC   UGUCCUAAA GAAA  UCA UC  AAGG UGUACCUG      A
 |||||||   ||||||||| ||||  ||| ||  |||| ||||||||      U
 GAUGAGG   GCAGGAUUU UUUU  GGU AG  UUCC ACAUGGAC      A
G       GAG         A    UA   U  AA    U        AUAUAU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR5490       UUGGAUUUUUAUUUAGGACGG
tae-miR10521      UUCGUUUUUUAU--AGGAUGG
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