TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR10518

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

AAGAGAUUUUGAAGGGAU

miRBase

Precursor miRNA Sequence(5'-3')

UAUAUCUAGACAUAGACUUUGUUCAGAUAAUAGUUACUCCCUCCGUUUUAAAAUAUAAGAGAUUUUGAAGGGAUGUGACACAUCUAGAGCUAGAAUAUGUCACAAACCUUUAAAAUUUCUUAUAGGACGGAGGGAGUUCGAGUUAGCUUAGGUAUUGUUUAGU

miRBase

Precursor miRNA Structure(5'-3') 

UAUAU       UAGA  UU  UCAGA    AGUU             UAAAA                  GA       -CA    G 
     CUAGACA    CU  GU     UAAU    ACUCCCUCCGUUU     UAUAAGAGAUUUUGAAGG  UGUGACA   UCUA A
     |||||||    ||  ||     ||||    |||||||||||||     ||||||||||||||||||  |||||||   ||||  
     GAUUUGU    GA  CG     AUUG    UGAGGGAGGCAGG     AUAUUCUUUAAAAUUUCC  ACACUGU   AGAU U
----U       UAUG  UU  -----    AGCU             -----                  AA       AUA    C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ptc-miR6421-5p      UCCCUUACAAUCUACUCUUUC-----
tae-miR10518        --------AAGAGAUUUUGAAGGGAU
                            **   * * *