TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ptc-miR6421-5p

Organism

Populus trichocarpa

Species

Mature miRNA Sequence(5'-3')

UCCCUUACAAUCUACUCUUUC

miRBase

Precursor miRNA Sequence(5'-3')

UGAAAUCCAAGUGGACUUCCCUUACAAUCUACUCUUUCAGUUUCACAGAAGAUCCAGAUUAGAUUUUAAGGCAAACAAAUUGAUAGAGCAGAUUGUAAGGGAAGCCCACAUGGAUUUCA

miRBase

Precursor miRNA Structure(5'-3') 

         A    A               A    U       ----CA AG      CA 
UGAAAUCCA GUGG CUUCCCUUACAAUCU CUCU UCAGUUU      C  AAGAUC  G
||||||||| |||| ||||||||||||||| |||| |||||||      |  ||||||  A
ACUUUAGGU CACC GAAGGGAAUGUUAGA GAGA AGUUAAA      G  UUUUAG  A
         A    C               C    U       CAAACG AA      AU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ptc-miR6421-5p      UCCCUUACAAUCUACUCUUUC-----
tae-miR10518        --------AAGAGAUUUUGAAGGGAU
                            **   * * *