TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR6027

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

UGAAUCCUUCGGCUAUCCAUAA

miRBase

Precursor miRNA Sequence(5'-3')

UUUCAUAAUUUUACAUGAUUAUGGGUAGCACAAGGAUUAAUGUGAAACAAAUAAGUGAUAUGUGAAGAACAUUGGAGAAUUCAAAGAGUUAGUUGUUAGGAAGAAAACACUUUGUGUUUCUCGUGAAUCCUUCGGCUAUCCAUAAUCAUGUUGAAUGUGUGACUU

miRBase

Precursor miRNA Structure(5'-3') 

-UU     -    U                 AC       A   U      AAU     AUAUGUGAAG    UUGGAG       
   UCAUA AUUU ACAUGAUUAUGGGUAGC  AAGGAUU AUG GAAACA   AAGUG          AACA      AAUUCA 
   ||||| |||| |||||||||||||||||  ||||||| ||| ||||||   |||||          ||||      ||||| A
   AGUGU UAAG UGUACUAAUACCUAUCG  UUCCUAA UGC CUUUGU   UUCAC          UUGU      UUGAGA 
UUC     G    U                 GC       G   U      -GU     AAAAGAAGGA    ---UGA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

sly-miR6027-3p      UGAAUCCUUCGGCUAUCCAUAA
stu-miR6027         UGAAUCCUUCGGCUAUCCAUAA
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