TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

sly-miR6027-3p

Organism

Solanum lycopersicum

Species

Mature miRNA Sequence(5'-3')

UGAAUCCUUCGGCUAUCCAUAA

miRBase

Precursor miRNA Sequence(5'-3')

UUUCGUAAUUUUACAUGAUUAUGGGUAGCACAAGGAUUAAUGUGAAACAGAAAAGUGAUAUGCAAAGAAGAUGGAGAUUCAAUUGUUUAUUGUUACGAAAAAAACACUUUUGUGUUUCUCGUGAAUCCUUCGGCUAUCCAUAAUCAUGUUGAAUAUGUUAUUU

miRBase

Precursor miRNA Structure(5'-3') 

---UUU    A   U                 AC       A   U      G       -AUAUGCAAAGAA      G UU 
      CGUA UUU ACAUGAUUAUGGGUAGC  AAGGAUU AUG GAAACA AAAAGUG             GAUGGA A  C
      |||| ||| |||||||||||||||||  ||||||| ||| |||||| |||||||             |||||| |   
      GUAU AAG UGUACUAAUACCUAUCG  UUCCUAA UGC CUUUGU UUUUCAC             UUAUUU U  U
UUUAUU    -   U                 GC       G   U      G       AAAAAAAGCAUUG      G UA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

sly-miR6027-3p      UGAAUCCUUCGGCUAUCCAUAA
stu-miR6027         UGAAUCCUUCGGCUAUCCAUAA
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