TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR6026-3p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

UUCUUGGCUAGAGUUGUAUUGC

miRBase

Precursor miRNA Sequence(5'-3')

UGACCACUUUUAUUUGGUAAUACAACUAUUGCCAAGACAAUGCUUCAUUAUAAGUGCAUAACUUUUCACUUUAUUGUUUGAGCAUUGUGUUGAUUUCUCUAACUUAUUUUUCUUUGAACAAAAUUGUUUUUUCAUCGCGAAAUGCAACACCAUGCUCAGAAGUUAGAGAGUGAAAUGCUAUGCAUUUGUAAUUAUAUAUUUUCUUGGCUAGAGUUGUAUUGCCAAGUCAAGUGUUUUAAUUG

miRBase

Precursor miRNA Structure(5'-3') 

-----UGAC     UU                AUU       C    CUUC              A U         --AUUG         U      -     U UAACUUAUUUUUCUUU     A 
         CACUU  AUUUGGUAAUACAACU   GCCAAGA AAUG    AUUAUAAGUGCAUA C UUUCACUUU      UUUGAGCAU GUGUUG AUUUC C                GAACA A
         |||||  ||||||||||||||||   ||||||| ||||    |||||||||||||| | |||||||||      ||||||||| |||||| ||||| |                |||||  
         GUGAA  UGAACCGUUAUGUUGA   CGGUUCU UUAU    UAAUGUUUACGUAU G AAAGUGAGA      AGACUCGUA CACAAC UAAAG G                UUUGU U
GUUAAUUUU     -C                GAU       U    AUAU              C U         GAUUGA         C      G     C ---------CUACUUU     U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

stu-miR6026-3p      UUCUUGGCUAGAGUUGUAUUGC
sly-miR6026         UUCUUGGCUAGAGUUGUAUUGC
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