TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR6025

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

UACCAACAAUUGAGAUAACAUC

miRBase

Precursor miRNA Sequence(5'-3')

UUCUUUGCCUAAUUCUGGUAUACCAACAAUUGAGAUAACAUCUAGGUUUGAUGAUCUUUUGAUUAGCUAAUUGUAUAGUUAUCACCUGUACACUUGCACAAAAUUAUUAUUGAACCUUGAUGUUAUCUCAGUGUUGGCAUGCAUAAAUUGGGUAAAUUUAU

miRBase

Precursor miRNA Structure(5'-3') 

--UUC           CUG    A      A             U            -C     AUUA  U  U       UU 
     UUUGCCUAAUU   GUAU CCAACA UUGAGAUAACAUC AGGUUUGAUGAU  UUUUG    GC AA UGUAUAG  A
     |||||||||||   |||| |||||| ||||||||||||| ||||||||||||  |||||    || || |||||||  U
     AAAUGGGUUAA   CGUA GGUUGU GACUCUAUUGUAG UCCAAGUUAUUA  AAAAC    CG UU ACAUGUC  C
UAUUU           AUA    C      -             U            UU     ---A  -  C       CA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

stu-miR6025      UACCAACAAUUGAGAUAACAUC
sly-miR6025      UACCAAUAAUUGAGAUAACAUC
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