TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

sly-miR6025

Organism

Solanum lycopersicum

Species

Mature miRNA Sequence(5'-3')

UACCAAUAAUUGAGAUAACAUC

miRBase

Precursor miRNA Sequence(5'-3')

UGGUAUACCAAUAAUUGAGAUAACAUCUAGGUUUAAUGAUCUUUUGAGUAGCUAAUUUGUAUAGUUAUUUCAUGUACACUUGCACAAAAAUAUUAUUGAACCUUGAUGUUAUCUCAGUGUUGGCAUGCAUAA

miRBase

Precursor miRNA Structure(5'-3') 

--UG    A      A             U            C    GA  A  UAAUU      GUU 
    GUAU CCAAUA UUGAGAUAACAUC AGGUUUAAUGAU UUUU  GU GC     UGUAUA   A
    |||| |||||| ||||||||||||| |||||||||||| ||||  || ||     ||||||   U
    CGUA GGUUGU GACUCUAUUGUAG UCCAAGUUAUUA AAAA  CA CG     ACAUGU   C
AAUA    C      -             U            U    -A  -  --UUC      ACU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

stu-miR6025      UACCAACAAUUGAGAUAACAUC
sly-miR6025      UACCAAUAAUUGAGAUAACAUC
                 ****** ***************