TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR169e-3p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

GCAAGUUAUCCUGGCUAUC

miRBase

Precursor miRNA Sequence(5'-3')

UAGCCAAGGAUGACUUGCCUACUCCAUUUGAUAAUAUUUUUUAUUUGGUUGUAGGCAAGUUAUCCUGGCUAUC

miRBase

Precursor miRNA Structure(5'-3') 

--      A               -U   UU   UAA 
  UAGCCA GGAUGACUUGCCUAC  CCA  UGA   U
  |||||| |||||||||||||||  |||  |||   A
  AUCGGU CCUAUUGAACGGAUG  GGU  AUU   U
CU      -               UU   UU   UUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR169l-3p      GGCAAGUUUUUCCUUGGCUAUA
stu-miR169e-3p      -GCAAGUUAUCC--UGGCUAUC
aly-miR169i-3p      -GGCAGUCUCCU--UGGAUAUC
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