TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR169l-3p

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

GGCAAGUUUUUCCUUGGCUAUA

miRBase

Precursor miRNA Sequence(5'-3')

GCAGAGAGUGUAGUACAGCCAAGGAUGACUUGCCGGCCGGCGUUAGUGAAGGCAAAGGCAAAUGAUCAUUCAUGUUCAUGCAUGCAUAUUCUCCGGCCGGCAAGUUUUUCCUUGGCUAUAUUGGACUUUCUUC

miRBase

Precursor miRNA Structure(5'-3') 

GC       G     C         -U              C UUA   AAG   AA    AA   U 
  AGAGAGU UAGUA AGCCAAGGA  GACUUGCCGGCCGG G   GUG   GCA  GGCA  UGA C
  ||||||| ||||| |||||||||  |||||||||||||| |   |||   |||  ||||  |||  
  UCUUUCA GUUAU UCGGUUCCU  UUGAACGGCCGGCC C   UAC   CGU  UUGU  ACU U
CU       G     A         UU              U UUA   GUA   AC    --   U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR169l-3p      GGCAAGUUUUUCCUUGGCUAUA
stu-miR169e-3p      -GCAAGUUAUCC--UGGCUAUC
aly-miR169i-3p      -GGCAGUCUCCU--UGGAUAUC
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