TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

smo-miR1102

Organism

Selaginella moellendorffii

Species

Mature miRNA Sequence(5'-3')

AGCUAUUGCCAGCGUCAAGCA

miRBase

Precursor miRNA Sequence(5'-3')

AAGCAUGAUUUGGGAGUAGCUAUUGCCAGCGUCAAGCAUGAUGUGCGAGUAGUGUGCAUGAUGUGCAAUCCUGCUUGAUGCUAGUAAUAGCUACUGCACAGUCU

miRBase

Precursor miRNA Structure(5'-3') 

AAGCAU    UG G            C           U   -     -A  AG 
      GAUU  G AGUAGCUAUUGC AGCGUCAAGCA GAU GUGCG  GU  U
      ||||  | |||||||||||| ||||||||||| ||| |||||  ||  G
      CUGA  C UCAUCGAUAAUG UCGUAGUUCGU CUA CGUGU  UA  C
-----U    CA G            A           C   A     AG  CG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

fve-miR11289      UGCUUCAAGUCUGGCCAAUACU-----
smo-miR1102       ------AGCUAUUGCCAGCGUCAAGCA
                        *  * * ****