TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

fve-miR11289

Organism

Fragaria vesca

Species

Mature miRNA Sequence(5'-3')

UGCUUCAAGUCUGGCCAAUACU

miRBase

Precursor miRNA Sequence(5'-3')

UGAAUGCUUCAAGUCUGGCCAAUACUUGCUCGCUCAAAUCAUCUUUCUUGCCUCUUAGGGUUUGAUCAUCCAUUUGUGAACCAGUACAGUCCGGCAAAGAUCGGCCAUUCGCCUGAGGCCACAA

miRBase

Precursor miRNA Structure(5'-3') 

UGAAU      A  --C     A  AC     -C   -----------     CAUCUU  UU    C 
     GCUUCA GU   UGGCC AU  UUGCU  GCU           CAAAU      UC  GCCU U
     |||||| ||   ||||| ||  |||||  |||           |||||      ||  ||||  
     CGGAGU CG   ACCGG UA  AACGG  UGA           GUUUA      AG  UGGG G
AACAC      C  CUU     C  GA     CC   CAUGACCAAGU     CCUACU  UU    A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

fve-miR11289      UGCUUCAAGUCUGGCCAAUACU-----
smo-miR1102       ------AGCUAUUGCCAGCGUCAAGCA
                        *  * * ****