TarDB

Precursor miRNA Sequence(5'-3')

AGCAGUAAUCUCUGUUCAUAUUCCAUGAAAGAGUUUUUGGAUAAGAUCUUUUACCGUAGUAAUCACAAAUCCUAGACGACUGUGCUCUUGGACAGAAAUUUCUGAUCAAAGCAUUUCCCUUCUUAAAUUCAAGAGAAUGCUUACAGUAGGUCCCUCAUCGAGUGUUUGUGAUUACUACGGUCAGGAAUCUUAUCCAGAGACAAUUCAUGGAAUAUGAGCUGAGAUUGGUGUCUA

miRBase

Precursor miRNA Structure(5'-3')

--A   G       U                AGA               -   UU                  C  -------A   -G      CUCUUGGACAGAAAUUUCUGAUCAAAG 
   GCA UAAUCUC GUUCAUAUUCCAUGAA   GUUUUUGGAUAAGAU CUU  ACCGUAGUAAUCACAAAU CU        GAC  ACUGUG                           C
   ||| ||||||| ||||||||||||||||   ||||||||||||||| |||  |||||||||||||||||| ||        |||  ||||||                           A
   UGU GUUAGAG CGAGUAUAAGGUACUU   CAGAGACCUAUUCUA GGA  UGGCAUCAUUAGUGUUUG GA        CUG  UGACAU                           U
AUC   G       U                -AA               A   -C                  U  GCUACUCC   GA      UCGUAAGAGAACUUAAAUUCUUCCCUU

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.