TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



sly-miR168b-3p
Solanum lycopersicum

Species
UUGCGGUGGUUUCUCAUUCGCUUGGUGCAGGUCGGGACCUACCUCGCCGGCAACAAUGGCGGUAGCUGACGGCGACGGCAGCGUACCGGUAAAAAAGAAUCUUAUUUUUACAUGUUGUUGCGUAGUUUGGGUCCCGCCUUGCAUCAACUGAAUAGGAGACUGCGGUGA

miRBase
    G         C     C          U         -C  -   C       AUGGCGGUAGCUGACGGCGACGGCAGC 
UUGC GUGGUUUCU AUUCG UUGGUGCAGG CGGGACCUA  CU CGC GGCAACA                           G
|||| ||||||||| ||||| |||||||||| |||||||||  || ||| |||||||                           U
AGUG CGUCAGAGG UAAGU AACUACGUUC GCCCUGGGU  GA GCG UUGUUGU                           C
    G         A     C          C         UU  U   -       ACAUUUUUAUUCUAAGAAAAAAUGGCC 

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR168a-3p      ---CCCGCCUUGCACCAAGUGAA-
bdi-miR168-3p       ---CCCGCCUUGCACCAAGUGAAU
hvu-miR168-3p       GAUCCCGCCUUGCACCAAGUGAAU
osa-miR168a-3p      GAUCCCGCCUUGCACCAAGUGAAU
zma-miR168b-3p      ---CCCGCCUUGCAUCAAGUGAA-
csi-miR168-3p       ---CCCGCCUUGCAUCAACUGAAU
sly-miR168a-3p      ---CCUGCCUUGCAUCAACUGAAU
fve-miR168-3p       ---CCCGCCUUGCAUCAACUGAAU
sly-miR168b-3p      ---CCCGCCUUGCAUCAACUGAAU
mtr-miR168c-3p      ---CCCGCCUUGCAUCAACUGAAU
aly-miR168a-3p      ---CCCGCCUUGCAUCAACUGAAU
ptc-miR168b-3p      ---CCCGCCUUGCAUCAACUGAAU
ptc-miR168a-3p      ---CCCGCCUUGCAUCAACUGAAU
ath-miR168a-3p      ---CCCGCCUUGCAUCAACUGAAU
esa-miRN1029        --UCCCGACU-GCAUCAACUGAAU
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