TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

hvu-miR168-3p

Organism

Hordeum vulgare

Species

Mature miRNA Sequence(5'-3')

GAUCCCGCCUUGCACCAAGUGAAU

miRBase

Precursor miRNA Sequence(5'-3')

GUCCGUCGCCGCCGCCUCGGGCUCGCUUGGUGCAGAUCGGGACCCUCCGCCCGCCCCGACGGGCCGGAUCCCGCCUUGCACCAAGUGAAUCGGAGCCGGCGCAGCG

miRBase

Precursor miRNA Structure(5'-3') 

GUC   C  C    C   G  C             AU     CCC    -    CC 
   CGU GC GCCG CUC GG UCGCUUGGUGCAG  CGGGA   UCCG CCCG  C
   ||| || |||| ||| || |||||||||||||  |||||   |||| ||||   
   GCG CG CGGC GAG CU AGUGAACCACGUU  GCCCU   AGGC GGGC  A
---   A  -    C   G  A             CC     ---    C    AG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR168a-3p      ---CCCGCCUUGCACCAAGUGAA-
bdi-miR168-3p       ---CCCGCCUUGCACCAAGUGAAU
hvu-miR168-3p       GAUCCCGCCUUGCACCAAGUGAAU
osa-miR168a-3p      GAUCCCGCCUUGCACCAAGUGAAU
zma-miR168b-3p      ---CCCGCCUUGCAUCAAGUGAA-
csi-miR168-3p       ---CCCGCCUUGCAUCAACUGAAU
sly-miR168a-3p      ---CCUGCCUUGCAUCAACUGAAU
fve-miR168-3p       ---CCCGCCUUGCAUCAACUGAAU
sly-miR168b-3p      ---CCCGCCUUGCAUCAACUGAAU
mtr-miR168c-3p      ---CCCGCCUUGCAUCAACUGAAU
aly-miR168a-3p      ---CCCGCCUUGCAUCAACUGAAU
ptc-miR168b-3p      ---CCCGCCUUGCAUCAACUGAAU
ptc-miR168a-3p      ---CCCGCCUUGCAUCAACUGAAU
ath-miR168a-3p      ---CCCGCCUUGCAUCAACUGAAU
esa-miRN1029        --UCCCGACU-GCAUCAACUGAAU
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