TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

sbi-miR5384

Organism

Sorghum bicolor

Species

Mature miRNA Sequence(5'-3')

CGCGCCGCCGUCCAGCGG

miRBase

Precursor miRNA Sequence(5'-3')

GGGGAACCAGGAAGCGGCGCCGCCGCCGGGCCCUUGGCCGGUGCACGCGUCCACCCGAGGGUUGGGCGCGCCGCCGUCCAGCGGCUCCGUGACGGCGCCAAAACCGGUGC

miRBase

Precursor miRNA Structure(5'-3') 

GGGGA   A  AAGC       C   C     C    C     CA        -  C 
     ACC GG    GGCGCCG CGC GGGCC UUGG CGGUG  CGCGUCCA CC G
     ||| ||    ||||||| ||| ||||| |||| |||||  |||||||| ||  
     UGG CC    CCGCGGC GUG CUCGG GACC GCCGC  GCGCGGGU GG G
---CG   -  AAAA       A   C     C    U     -C        U  G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR5075      UUCUCCGUCGCCGCCGUCCGC---
sbi-miR5384      -----CG-CGCCGCCGUCCAGCGG
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