TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

sbi-miR437n

Organism

Sorghum bicolor

Species

Mature miRNA Sequence(5'-3')

AAAGUUAGAGAAGUUUGACUU

miRBase

Precursor miRNA Sequence(5'-3')

AAGUAAAUUCUCUCCAACUUUGACCAAGUUUAUAGAAAAUACACCAACAUGGCAACAUCUACAAAAUGAAAUGAAUUUCGUAAAAUCUAUUUUGAAUAUUCUUGAUAGUGCAAUUAUUUGGUAUUGCUGAUGUUAGUAUAUUUUUCUACAAACUUGGUUAAAGUUAGAGAAGUUUGACUUAU

miRBase

Precursor miRNA Structure(5'-3') 

--    -     C    C                A       -  C  C     -     C   UACAAAAUGAAAUGAAUUUCGUAAAAUCU 
  AAGU AAAUU UCUC AACUUUGACCAAGUUU UAGAAAA UA AC AACAU GGCAA AUC                             A
  |||| ||||| |||| |||||||||||||||| ||||||| || || ||||| ||||| |||                              
  UUCA UUUGA AGAG UUGAAAUUGGUUCAAA AUCUUUU AU UG UUGUA UCGUU UGG                             U
UA    G     -    A                C       U  A  A     G     A   UUUAUUAACGUGAUAGUUCUUAUAAGUUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR437       AAAGUUAGAGAAGUUUGACUU
sbi-miR437a      AAAGUUAGAGAAGUUUGACUU
sbi-miR437b      AAAGUUAGAGAAGUUUGACUU
sbi-miR437c      AAAGUUAGAGAAGUUUGACUU
sbi-miR437d      AAAGUUAGAGAAGUUUGACUU
sbi-miR437e      AAAGUUAGAGAAGUUUGACUU
sbi-miR437f      AAAGUUAGAGAAGUUUGACUU
sbi-miR437g      AAAGUUAGAGAAGUUUGACUU
sbi-miR437i      AAAGUUAGAGAAGUUUGACUU
sbi-miR437j      AAAGUUAGAGAAGUUUGACUU
sbi-miR437k      AAAGUUAGAGAAGUUUGACUU
sbi-miR437l      AAAGUUAGAGAAGUUUGACUU
sbi-miR437m      AAAGUUAGAGAAGUUUGACUU
sbi-miR437n      AAAGUUAGAGAAGUUUGACUU
sbi-miR437o      AAAGUUAGAGAAGUUUGACUU
sbi-miR437p      AAAGUUAGAGAAGUUUGACUU
sbi-miR437q      AAAGUUAGAGAAGUUUGACUU
sbi-miR437r      AAAGUUAGAGAAGUUUGACUU
sbi-miR437s      AAAGUUAGAGAAGUUUGACUU
sbi-miR437t      AAAGUUAGAGAAGUUUGACUU
sbi-miR437u      AAAGUUAGAGAAGUUUGACUU
sbi-miR437v      AAAGUUAGAGAAGUUUGACUU
sbi-miR437w      AAAGUUAGAGAAGUUUGACUU
bdi-miR437       GAACUUAGAGAAGUUUGACUU
                  ** *****************