TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

sbi-miR2118-3p

Organism

Sorghum bicolor

Species

Mature miRNA Sequence(5'-3')

UUCCUGAUGCCUCCCAUGCCUA

miRBase

Precursor miRNA Sequence(5'-3')

GUGGGCAUGGAAGAGGAAGAAAAGAGGGUCUAAGAGCAGUGGGCAUGGGAACAUGUAGGAAGGCCUUUGAGAUGGAAAGCUCAUUUUGGGUCUUCCUGAUGCCUCCCAUGCCUAUUGUUCUUAGGUGCUCCUUCCUCUUGCUUUUGGCUCAC

miRBase

Precursor miRNA Structure(5'-3') 

      ---AU G         AAAA   G                       -A   G           UU       A 
GUGGGC     G AAGAGGAAG    GAG GUCUAAGAGCAGUGGGCAUGGGA  CAU UAGGAAGGCCU  GAGAUGG A
||||||     | |||||||||    ||| |||||||||||||||||||||||  ||| |||||||||||  ||||||| A
CACUCG     C UUCUCCUUC    CUC UGGAUUCUUGUUAUCCGUACCCU  GUA GUCCUUCUGGG  UUUUACU U
      GUUUU G         ----   G                       CC   -           --       C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR2118d        UUCCUGAUGCCUCCCAUGCCUA
sbi-miR2118-3p      UUCCUGAUGCCUCCCAUGCCUA
osa-miR2118o        CUCCUGAUGCCUCCCAAGCCUA
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