TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

sbi-miR169p

Organism

Sorghum bicolor

Species

Mature miRNA Sequence(5'-3')

UAGCCAAGAAUGGCUUGCCUA

miRBase

Precursor miRNA Sequence(5'-3')

UUAGCCAAGAAUGGCUUGCCUAUCUCCAUUAUUUGGUUCAUCAGAGGGACCUCUGAUCCCUCAUGAUGGAUGAAAUGUGGAUGAUGGCAGCCCUUCUGGCUAAGU

miRBase

Precursor miRNA Structure(5'-3') 

--       A   U    U   U   -     U    G        -      CC 
  UUAGCCA GAA GGCU GCC AUC UCCAU AUUU GUUCAUCA GAGGGA  U
  ||||||| ||| |||| ||| ||| ||||| |||| |||||||| ||||||  C
  AAUCGGU CUU CCGA CGG UAG AGGUG UAAA UAGGUAGU CUCCCU  A
UG       -   C    -   -   U     -    G        A      AG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

sbi-miR169q         -UAGCCAAGAAUGGCUUGCCUA
bdi-miR169j-5p      -UAGCCAGGAAUGGCUUGCCUA
sbi-miR169p         -UAGCCAAGAAUGGCUUGCCUA
zma-miR169q-5p      -UAGCCAAGAAUGGCUUGCCUA
zma-miR169n-5p      -UAGCCAAGAAUGGCUUGCCUA
zma-miR169m-5p      -UAGCCAAGAAUGGCUUGCCUA
bdi-miR169i         CCAGCCAAGAAUGGCUUGCCUA
zos-miR169a         -CAGCCAAGGAUGACUUGCCUA
zos-miR169b         -CAGCCAAGGAUGACUUGCCUA
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