TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

pvu-miR2119

Organism

Phaseolus vulgaris

Species

Mature miRNA Sequence(5'-3')

UCAAAGGGAGUUGUAGGGGAA

miRBase

Precursor miRNA Sequence(5'-3')

AUCAAUGUUGUUACUUUUACACUUUAUUUUCUAUGCUUUUCCUCUACAACUCUCUUUUAUUUUGGAGAAAUGAAGUGGAUUUCUACUCUUUGAUUGGAGAAAAAAAGUGGAUUUCUAUUUUUUUCAAUCAAAGGGAGUUGUAGGGGAA

miRBase

Precursor miRNA Structure(5'-3') 

AUCAAUGUUGUUACUUUUACACUUUAUUUUCUAUGCUU                   UAUU         UGAA     UU      C   GAUU 
                                      UUCCUCUACAACUCUCUUU    UUGGAGAAA    GUGGA  UCUACU UUU    G
                                      |||||||||||||||||||    |||||||||    |||||  |||||| |||     
                                      AAGGGGAUGUUGAGGGAAA    AACUUUUUU    UAUCU  AGGUGA AAA    G
--------------------------------------                   --CU         ----     UU      A   AAGA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR2119      UCAAAGGGAGUUGUAGGGGAA
pvu-miR2119      UCAAAGGGAGUUGUAGGGGAA
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