TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR2119

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UCAAAGGGAGUUGUAGGGGAA

miRBase

Precursor miRNA Sequence(5'-3')

AUACUUCAUUUUUUAUACUUUAAUUUCCUCUAUACCUCACUUUUAUUGGAGAAAAAAGAGAAUAGAAAAUAGUGGAUUUCUCUUCUUUUUUUCAAUCAAAGGGAGUUGUAGGGGAAAAGUUUAGAAAAUGGCGUGU

miRBase

Precursor miRNA Structure(5'-3') 

    U          U     AAUU         C   A     -           -       UAGAAA 
AUAC UCAUUUUUUA ACUUU    UCCUCUAUA CUC CUUUU AUUGGAGAAAA AAGAGAA      A
|||| |||||||||| |||||    ||||||||| ||| ||||| ||||||||||| |||||||      U
UGUG GGUAAAAGAU UGAAA    AGGGGAUGU GAG GGAAA UAACUUUUUUU UUCUCUU      U
    C          U     ----         U   -     C           C       UAGGUG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR2119      UCAAAGGGAGUUGUAGGGGAA
pvu-miR2119      UCAAAGGGAGUUGUAGGGGAA
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