TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

pvi-miR162b

Organism

Panicum virgatum

Species

Mature miRNA Sequence(5'-3')

UCGAUAAACCUCUGCAUCCAG

PmiREN

Precursor miRNA Sequence(5'-3')

TTCATCTACAGGTGGTGCCTGGGCGCAGTGGTTTATCGATCCCTTCCTTGCCTTGTACATGCTGATCCGGGAGCGGTGGTTCAAGTGTTTCTTGTTGCAGCAGCTTTGCAGACAACGCGGGAATCGGTCGATAAACCTCTGCATCCAGCTCTCACCTCGGTCCCTGCT

PmiREN

Precursor miRNA Structure(5'-3') 

--UUCAUCUAC     - U  C    C    U            CC     U  C    ------ACA     -AUCC       G GG 
           AGGUG G GC UGGG GCAG GGUUUAUCGAUC  UUCCU GC UUGU         UGCUG     GGGAGCG U  U
           ||||| | || |||| |||| ||||||||||||  ||||| || ||||         |||||     ||||||| |   
           UCCAC C CG ACCU CGUC CCAAAUAGCUGG  AAGGG CG AACA         ACGAC     UCUUUGU A  A
UCGUCCCUGGC     U U  -    A    U            CU     -  C    GACGUUUCG     GUUGU       G AC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bol-miR162          UCGAUAAACCUCUGCAUCCA-
zma-miR162-3p       UCGAUAAACCUCUGCAUCCA-
gma-miR162a         UCGAUAAACCUCUGCAUCCA-
bra-miR162a         UCGAUAAACCUCUGCAUCCAG
bra-miR162c         UCGAUAAACCUCUGCAUCCAG
esa-miR162a         UCGAUAAACCUCUGCAUCCAG
esa-miR162b         UCGAUAAACCUCUGCAUCCAG
mac-miR162a         UCGAUAAACCUCUGCAUCCAG
pha-miR162          UCGAUAAACCUCUGCAUCCAG
pvi-miR162a         UCGAUAAACCUCUGCAUCCAG
pvi-miR162b         UCGAUAAACCUCUGCAUCCAG
sit-miR162          UCGAUAAACCUCUGCAUCCAG
ath-miR162a-3p      UCGAUAAACCUCUGCAUCCAG
ath-miR162b-3p      UCGAUAAACCUCUGCAUCCAG
osa-miR162a         UCGAUAAACCUCUGCAUCCAG
mtr-miR162          UCGAUAAACCUCUGCAUCCAG
ptc-miR162a         UCGAUAAACCUCUGCAUCCAG
ptc-miR162b         UCGAUAAACCUCUGCAUCCAG
sbi-miR162          UCGAUAAACCUCUGCAUCCAG
aly-miR162b-3p      UCGAUAAACCUCUGCAUCCAG
lus-miR162a         UCGAUAAACCUCUGCAUCCAG
mes-miR162          UCGAUAAACCUCUGCAUCCAG
fve-miR162-3p       UCGAUAAACCUCUGCAUCCAG
sly-miR162          UCGAUAAACCUCUGCAUCCAG
osa-miR162b         UCGAUAAGCCUCUGCAUCCAG
aly-miR162a-3p      UCGAUAAACCUCUGCAUCCAG
gma-miR162c         UCGAUAAACCUCUGCAUCCAG
mdm-miR162b         UCGAUAAACCUCUGCAUCCAG
ppe-miR162          UCGAUAAACCUCUGCAUCCAG
mac-miR162b         UCGAUAAACCUCUGCAUCCGG
mac-miR162c         UCGAUAAACCUCUGCAUCCGG
mac-miR162d         UCGAUAAACCUCUGCAUCCGG
mac-miR162e         UCGAUAAACCUCUGCAUCCGG
mac-miR162f         UCGAUAAACCUCUGCAUCCGG
mac-miR162g         UCGAUAAACCUCUGCAUCCGG
bdi-miR162          UCGAUAAACCUCUGCAUCCGG
vvi-miR162          UCGAUAAACCUCUGCAUCCAG
rco-miR162          UCGAUAAACCUCUGCAUCCAG
gma-miR162b         UCGAUAAACCUCUGCAUCCAG
mdm-miR162a         UCGAUAAACCUCUGCAUCCAG
stu-miR162b-3p      UCGAUAAACCUCUGCAUCCAG
stu-miR162a-3p      UCGAUAAACCUCUGCAUCCAG
lus-miR162b         UCGAUAAACCUCUGCAUCCAG
tcc-miR162          UCGAUAAACCUCUGCAUCCAG
csi-miR162-3p       UCGAUAAACCUCUGCAUCCAG
cpa-miR162a         UCGAUAAACCUCUGCAUCCAG
bra-miR162b         UCGAUAAACCUGUGCAUCCAG
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