TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



pha-miR162
Panicum hallii

Species
CATCTACACAGGTGGTGTCTGGGCGCAGTGGTTTATCGATCCCTTCCTTGCCTTGTGCTGATTCGGGAGCGGTGGTTCAAGTGTTTCTTGTTGCAGCAGCTTTGCAGACAACGCGGGAATCGGTCGATAAACCTCTGCATCCAGCTCTCACCTCGCTTGGTCCC

PmiREN
CAUCU  A     --    ---U     C    U            CC     U  C    G   AUUCG     - G  GUU    U 
     AC CAGGU  GGUG    CUGGG GCAG GGUUUAUCGAUC  UUCCU GC UUGU CUG     GGAGC G UG   CAAG G
     || |||||  ||||    ||||| |||| ||||||||||||  ||||| || |||| |||     ||||| | ||   |||| U
     UG GUUCG  CCAC    GACCU CGUC CCAAAUAGCUGG  AAGGG CG AACA GAC     UUUCG C AC   GUUC C
--CCC  -     CU    UCUC     A    U            CU     -  C    -   ----G     A G  GUU    U 

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bol-miR162          UCGAUAAACCUCUGCAUCCA-
zma-miR162-3p       UCGAUAAACCUCUGCAUCCA-
gma-miR162a         UCGAUAAACCUCUGCAUCCA-
bra-miR162a         UCGAUAAACCUCUGCAUCCAG
bra-miR162c         UCGAUAAACCUCUGCAUCCAG
esa-miR162a         UCGAUAAACCUCUGCAUCCAG
esa-miR162b         UCGAUAAACCUCUGCAUCCAG
mac-miR162a         UCGAUAAACCUCUGCAUCCAG
pha-miR162          UCGAUAAACCUCUGCAUCCAG
pvi-miR162a         UCGAUAAACCUCUGCAUCCAG
pvi-miR162b         UCGAUAAACCUCUGCAUCCAG
sit-miR162          UCGAUAAACCUCUGCAUCCAG
ath-miR162a-3p      UCGAUAAACCUCUGCAUCCAG
ath-miR162b-3p      UCGAUAAACCUCUGCAUCCAG
osa-miR162a         UCGAUAAACCUCUGCAUCCAG
mtr-miR162          UCGAUAAACCUCUGCAUCCAG
ptc-miR162a         UCGAUAAACCUCUGCAUCCAG
ptc-miR162b         UCGAUAAACCUCUGCAUCCAG
sbi-miR162          UCGAUAAACCUCUGCAUCCAG
aly-miR162b-3p      UCGAUAAACCUCUGCAUCCAG
lus-miR162a         UCGAUAAACCUCUGCAUCCAG
mes-miR162          UCGAUAAACCUCUGCAUCCAG
fve-miR162-3p       UCGAUAAACCUCUGCAUCCAG
sly-miR162          UCGAUAAACCUCUGCAUCCAG
osa-miR162b         UCGAUAAGCCUCUGCAUCCAG
aly-miR162a-3p      UCGAUAAACCUCUGCAUCCAG
gma-miR162c         UCGAUAAACCUCUGCAUCCAG
mdm-miR162b         UCGAUAAACCUCUGCAUCCAG
ppe-miR162          UCGAUAAACCUCUGCAUCCAG
mac-miR162b         UCGAUAAACCUCUGCAUCCGG
mac-miR162c         UCGAUAAACCUCUGCAUCCGG
mac-miR162d         UCGAUAAACCUCUGCAUCCGG
mac-miR162e         UCGAUAAACCUCUGCAUCCGG
mac-miR162f         UCGAUAAACCUCUGCAUCCGG
mac-miR162g         UCGAUAAACCUCUGCAUCCGG
bdi-miR162          UCGAUAAACCUCUGCAUCCGG
vvi-miR162          UCGAUAAACCUCUGCAUCCAG
rco-miR162          UCGAUAAACCUCUGCAUCCAG
gma-miR162b         UCGAUAAACCUCUGCAUCCAG
mdm-miR162a         UCGAUAAACCUCUGCAUCCAG
stu-miR162b-3p      UCGAUAAACCUCUGCAUCCAG
stu-miR162a-3p      UCGAUAAACCUCUGCAUCCAG
lus-miR162b         UCGAUAAACCUCUGCAUCCAG
tcc-miR162          UCGAUAAACCUCUGCAUCCAG
csi-miR162-3p       UCGAUAAACCUCUGCAUCCAG
cpa-miR162a         UCGAUAAACCUCUGCAUCCAG
bra-miR162b         UCGAUAAACCUGUGCAUCCAG
                    ******* *** *******