TarDB

Precursor miRNA Sequence(5'-3')

CAUAAUUCAAAUAAUCCAAAAAAAAUAAACCAAAUACCUUCCACCUCAAGCGUUUCACGUCGGGUUCACCAAAUAUGUUGUAUUAUGUGAAGUUUUGAUUGAGAAUGCACCGAGCACUUGGCUAUGGAAGGUAAAAGAAAAUUGCAACAAAAAGUCCUAACAAUCCAAUAGGAUUAUAGAAAAUUUAUAAUUAAACGUUAACAAUCAUAAUCAAACAAUA

miRBase

Precursor miRNA Structure(5'-3')

---------------------------------------------------------------CAUAAUUCAAAUAAUCCAAAAAAAAUAAACCAAAUACCUUCCACCUCAA    -    C      --     CA       
                                                                                                                GCGU UUCA GUCGGG  UUCAC  AAUAUG 
                                                                                                                |||| |||| ||||||  |||||  ||||| U
                                                                                                                CGUA GAGU UAGUUU  AAGUG  UUAUGU 
AUAACAAACUAAUACUAACAAUUGCAAAUUAAUAUUUAAAAGAUAUUAGGAUAACCUAACAAUCCUGAAAAACAACGUUAAAAGAAAAUGGAAGGUAUCGGUUCACGAGCCA    A    -      UG     UA

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.