TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR5077

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

GUUCGCGUCGGGUUCACCA

miRBase

Precursor miRNA Sequence(5'-3')

UGCCUUUUCGUUGUUCGCGUCGGGUUCACCAGCUAGGUGGUUCGCCAUGAAGUACAGGAAGGGGGUCGCCGGCGAGUCCAACGAUGACGAC

miRBase

Precursor miRNA Structure(5'-3') 

UGCCUUU      UU G      - -   A  AG  AG   G   G 
       UCGUUG  C CGUCGG G UUC CC  CU  GUG UUC C
       ||||||  | |||||| | ||| ||  ||  ||| ||| C
       AGCAAC  G GCGGCC C GGG GG  GG  CAU AAG G
CAGCAGU      CU A      G U   -  AA  -A   G   U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ppt-miR894       CGUUUCACGUCGGGUUCACC-
osa-miR5077      --GUUCGCGUCGGGUUCACCA
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