TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ppe-miR7125-3p

Organism

Prunus persica

Species

Mature miRNA Sequence(5'-3')

CGAACUUAUUGCAACUAGCUU

miRBase

Precursor miRNA Sequence(5'-3')

GUGACGAAGCCAAAGCUCUCAAAUGCAAGCUAGGUGCAACAAGUUCAAUCUUUAUGUGGCUGGUGCCCCUUAUAAGCAUCGAACUUAUUGCAACUAGCUUUCAUUUUUGAGCUUUAUAAUGUCAC

miRBase

Precursor miRNA Structure(5'-3') 

      AAGCC       UC     C       G     C      A  C      --U   U 
GUGACG     AAAGCUC  AAAUG AAGCUAG UGCAA AAGUUC AU UUUAUG   GGC G
||||||     |||||||  ||||| ||||||| ||||| |||||| || ||||||   |||  
CACUGU     UUUCGAG  UUUAC UUCGAUC ACGUU UUCAAG UA GAAUAU   CCG G
      -AAUA       UU     U       A     A      C  C      UCC   U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mdm-miR7125         CGAACUUAUUGCAACUAGCUU
ppe-miR7125-3p      CGAACUUAUUGCAACUAGCUU
                    *********************