TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mdm-miR7125

Organism

Malus domestica

Species

Mature miRNA Sequence(5'-3')

CGAACUUAUUGCAACUAGCUU

miRBase

Precursor miRNA Sequence(5'-3')

AAAGCUCUCAAAUGCAAGCUAGUUGUAAUAAGUUCAAUCUUUUUAUGGCCAGUAGUGCCCUAAAUAAGCAUCGAACUUAUUGCAACUAGCUUUAAUUUUUGAGUUUU

miRBase

Precursor miRNA Structure(5'-3') 

       UC    GC                    A  -   -    U   - A 
AAAGCUC  AAAU  AAGCUAGUUGUAAUAAGUUC AU CUU UUUA GGC C G
|||||||  ||||  |||||||||||||||||||| || ||| |||| ||| |  
UUUUGAG  UUUA  UUCGAUCAACGUUAUUCAAG UA GAA AAAU CCG G G
       UU    AU                    C  C   U    C   U A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mdm-miR7125         CGAACUUAUUGCAACUAGCUU
ppe-miR7125-3p      CGAACUUAUUGCAACUAGCUU
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