TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ppe-miR5225-3p

Organism

Prunus persica

Species

Mature miRNA Sequence(5'-3')

UCAUCUCUCCUCGACUGAA

miRBase

Precursor miRNA Sequence(5'-3')

AUCAAAUUCGUAGGGGCUUCUGUCGUAGGAGAGAUGGCGCCAAAUGCAAUCAUAUUGGUUUGGUACUAAUUAUGGUAGAAUUAAAGCUAAGCCAAUUUGGGCACCGGGUUUCAUCUCUCCUCGACUGAAGCCCCUCACUUUGAU

miRBase

Precursor miRNA Structure(5'-3') 

      UUC  -         U    U           C   AAA   AA   U           AC     AU 
AUCAAA   GU AGGGGCUUC GUCG AGGAGAGAUGG GCC   UGC  UCA AUUGGUUUGGU  UAAUU  G
||||||   || ||||||||| |||| ||||||||||| |||   |||  ||| |||||||||||  |||||  G
UAGUUU   CA UCCCCGAAG CAGC UCCUCUCUACU UGG   ACG  GGU UAACCGAAUCG  AUUAA  G
      ---  C         U    -           U   GCC   --   U           AA     GA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR5225a        UCAGUCGCAGGAGAGAUGACAC
ppe-miR5225-3p      UCA-UCUCUCCUCGACUGAA--
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