TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR5225a

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

UCAGUCGCAGGAGAGAUGACAC

miRBase

Precursor miRNA Sequence(5'-3')

UACACGGACUUCAGUCGCAGGAGAGAUGACACCUUCUGUUUCUAAUGGCAUGGUUGCAACCAAUUUUAACAGGAGUUGUCAUCUUUCUUCGACUGAAGUCCAUAUGCAU

miRBase

Precursor miRNA Structure(5'-3') 

---UACAC            C             C        UCUAA   CA  G 
        GGACUUCAGUCG AGGAGAGAUGACA CUUCUGUU     UGG  UG U
        |||||||||||| ||||||||||||| ||||||||     |||  ||  
        CCUGAAGUCAGC UUCUUUCUACUGU GAGGACAA     ACC  AC C
UACGUAUA            -             U        UUUUA   -A  G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR5225a        UCAGUCGCAGGAGAGAUGACAC
ppe-miR5225-3p      UCA-UCUCUCCUCGACUGAA--
                    *** ** *        ***