TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ppe-miR3627-5p

Organism

Prunus persica

Species

Mature miRNA Sequence(5'-3')

UCGCAGGAGAGAUGGCACUGUC

miRBase

Precursor miRNA Sequence(5'-3')

AAGUUGAGGGAUUUAUGUUCGCAGGAGAGAUGGCACUGUCUGUGGUGCAACUAGCUACCAGCAGAUGGUGUCAUCCCUCCUGUGACCAGAAAACCCUAUAACUU

miRBase

Precursor miRNA Structure(5'-3') 

      -    A   A  U         A              -    -  A 
AAGUUG AGGG UUU UG UCGCAGGAG GAUGGCACUGUCUG UGGU GC A
|||||| |||| ||| || ||||||||| |||||||||||||| |||| || C
UUCAAU UCCC AAA AC AGUGUCCUC CUACUGUGGUAGAC ACCA CG G
      A    A   G  C         C              G    U  A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR5225b        UCGCAGGAGAGAUGACACCUUC
mtr-miR5225c        UCGCAGGAGAGAUGACACCUUC
ppe-miR3627-5p      UCGCAGGAGAGAUGGCACUGUC
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