TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR5225b

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

UCGCAGGAGAGAUGACACCUUC

miRBase

Precursor miRNA Sequence(5'-3')

GGGACUUUAGUCGCAGGAGAGAUGACACCUUCUAUUACUAAUGACAUGAUUUUAUAGCAAUUUUAACAGAAGUUGUCAUCUUUCUUUGACUGAAGUUCA

miRBase

Precursor miRNA Structure(5'-3') 

G            C             C     A   CU A  AC   A 
 GGACUUUAGUCG AGGAGAGAUGACA CUUCU UUA  A UG  AUG U
 |||||||||||| ||||||||||||| ||||| |||  | ||  |||  
 CUUGAAGUCAGU UUCUUUCUACUGU GAAGA AAU  U AC  UAU U
A            -             U     C   UU A  GA   U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR5225b        UCGCAGGAGAGAUGACACCUUC
mtr-miR5225c        UCGCAGGAGAGAUGACACCUUC
ppe-miR3627-5p      UCGCAGGAGAGAUGGCACUGUC
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