TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR426

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

UUUUGGAAGUUUGUCCUUACG

miRBase

Precursor miRNA Sequence(5'-3')

UCGCAUUUUUGGAAGUUUGUCCUUACGAAAAGGCUAGCAAAAUUUAGUGAGGCAAUGAAUGAAAAGACAUCUAGCGAUACUAAAAUUAAAAUUUGAUAACCCUAAAAUGUGUCAAACUUUGGCAUUUCGUGAAAAUCCUUCAAUGCGA

miRBase

Precursor miRNA Structure(5'-3') 

       UUUG    UUU  CC        AG     CAAAAUUUAGUGAGGCAAUGAAUGAAAAGACAUCUAGCG 
UCGCAUU    GAAG   GU  UUACGAAA  GCUAG                                       A
|||||||    ||||   ||  ||||||||  |||||                                       U
AGCGUAA    CUUC   UA  AGUGCUUU  CGGUU                                       U
       ----    --C  AA        -A     UCAAACUGUGUAAAAUCCCAAUAGUUUAAAAUUAAAAUC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR426      UUUUGGAAAUUUGUCCUUACG
osa-miR426      UUUUGGAAGUUUGUCCUUACG
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